Basic Information
Locus ID:
jg12516
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1461776 | 1466797 | + | jg12516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 41,874.42 Da | 53.10 | 83.51 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 314 | 354 | 2.49326E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 313 | 358 | 2.2E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 281 | 359 | 3.24E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 364 | 2.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 315 | 353 | 4.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 354 | 11.264779 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011090798.1 | probable E3 ubiquitin-protein ligase LUL4 [Sesamum indicum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9G5M8 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27272 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology