Basic Information
Locus ID:
jg12493
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 1318466 | 1326658 | - | jg12493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 65,877.23 Da | 39.27 | 104.10 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 316 | 338 | 0.25 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 472 | 494 | 5.3E-4 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 446 | 468 | 0.045 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 161 | 182 | 0.0051 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 268 | 286 | 0.12 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 187 | 210 | 0.079 | IPR001611 |
| Pfam | PF18511 | F-box | 11 | 48 | 1.5E-9 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 44 | 8.63E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 123 | 332 | 2.62E-28 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 268 | 581 | 1.19E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 354 | 607 | 7.7E-52 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 262 | 5.6E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 263 | 353 | 3.5E-16 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 47 | 5.0E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 118 | 186 | 1.1E-11 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 446 | 471 | 2.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 523 | 548 | 9.3E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 290 | 315 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 214 | 239 | 9.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 394 | 419 | 0.0043 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 265 | 289 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 162 | 186 | 0.072 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 549 | 574 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 240 | 264 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 420 | 445 | 9.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 497 | 522 | 85.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 368 | 393 | 0.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 136 | 161 | 1.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 316 | 341 | 0.74 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 342 | 367 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 187 | 212 | 5.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 472 | 496 | 0.024 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_011090837.1 | F-box/LRR-repeat protein 4 [Sesamum indicum] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UA28 | F-box/LRR-repeat protein 4 OS=Sesamum indicum OX=4182 GN=LOC105171419 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |