Basic Information
Locus ID:
jg1248
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 5163693 | 5165817 | - | jg1248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 48,249.00 Da | 64.98 | 76.45 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 140 | 183 | 9.33159E-18 | - |
| Pfam | PF13639 | Ring finger domain | 140 | 183 | 4.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 190 | 5.55E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 191 | 4.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 182 | 6.6E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 137 | 190 | 0.0095 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.946621 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 225 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011087927.2 | RING-H2 finger protein ATL54-like [Sesamum indicum] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9TSS7 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105169258 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology