Basic Information
Locus ID:
jg12440
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
CUL1
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 865820 | 878383 | + | jg12440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 116,786.22 Da | 40.35 | 88.17 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 534 | 640 | 3.2E-17 | IPR001373 |
| Pfam | PF00888 | Cullin family | 751 | 916 | 4.5E-50 | IPR001373 |
| Pfam | PF10557 | Cullin protein neddylation domain | 943 | 1005 | 4.0E-25 | IPR019559 |
| Pfam | PF00888 | Cullin family | 224 | 507 | 1.8E-71 | IPR001373 |
| Pfam | PF00888 | Cullin family | 38 | 127 | 1.3E-8 | IPR001373 |
| Pfam | PF00888 | Cullin family | 639 | 753 | 1.2E-12 | IPR001373 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 548 | 603 | 1.18E-9 | IPR016159 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 120 | 452 | 1.12E-83 | IPR016159 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 617 | 712 | 2.56E-10 | IPR016159 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 928 | 1013 | 2.4E-26 | IPR036390 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 457 | 527 | 2.88E-11 | IPR036317 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 8 | 115 | 6.28E-16 | IPR016159 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 718 | 929 | 2.75E-58 | IPR036317 |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 776 | 929 | 2.7E-53 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 633 | 694 | 1.7E-12 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 116 | 224 | 1.1E-19 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 348 | 459 | 1.9E-38 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 3 | 115 | 2.0E-19 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 930 | 1013 | 8.4E-29 | IPR036388 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 482 | 608 | 1.9E-16 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 716 | 771 | 4.1E-6 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 225 | 344 | 1.4E-38 | - |
| SMART | SM00884 | Cullin_Nedd8_2 | 940 | 1007 | 6.5E-34 | IPR019559 |
| SMART | SM00182 | cul_2 | 698 | 838 | 2.4E-15 | IPR016158 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 607 | 888 | 30.808653 | IPR016158 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 458 | 517 | 10.897505 | IPR016158 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02570.1 | cullin 1. Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. | 0 |
| RefSeq | XP_020086882.1 | cullin-1-like isoform X2 [Ananas comosus] | 0 |
| Q94AH6 | Cullin-1 OS=Arabidopsis thaliana OX=3702 GN=CUL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5ETS2 | cullin-1-like isoform X2 OS=Ananas comosus OX=4615 GN=LOC109709192 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for jg12440.