Basic Information
Locus ID:
jg12330
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
SHR-binding domain of vacuolar-sorting associated protein 13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 61498 | 131295 | + | jg12330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 467,394.38 Da | 43.84 | 89.08 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2608 | 2712 | 1.70913E-5 | - |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 382 | 3.8E-66 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 575 | 797 | 5.3E-33 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 2.2E-31 | IPR026854 |
| Pfam | PF06398 | Integral peroxisomal membrane peroxin | 2855 | 2978 | 3.8E-10 | IPR010482 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3229 | 3538 | 1.4E-10 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2268 | 2353 | 1.0E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1973 | 2129 | 2.4E-12 | IPR009291 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2587 | 2713 | 1.19E-5 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2590 | 2732 | 3.5E-6 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2587 | 2726 | 9.051065 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1812 | 1840 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_012842600.1 | PREDICTED: uncharacterized protein LOC105962815 isoform X1 [Erythranthe guttata] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UN18 | uncharacterized protein LOC105178851 OS=Sesamum indicum OX=4182 GN=LOC105178851 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology