Basic Information
Locus ID:
jg12196
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr30 | 10163813 | 10174316 | + | jg12196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 67,009.14 Da | 66.98 | 68.28 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 203 | 334 | 3.37656E-43 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 406 | 449 | 1.06658E-22 | - |
| Pfam | PF13639 | Ring finger domain | 406 | 449 | 5.3E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 235 | 315 | 6.0E-10 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 250 | 324 | 1.44E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 398 | 462 | 1.06E-19 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 187 | 328 | 6.8E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 368 | 454 | 1.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 407 | 448 | 6.2E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 407 | 449 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_022875957.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Olea europaea var. sylvestris] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9I0Q9 | Putative E3 ubiquitin ligase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03937 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology