Basic Information
Locus ID:
jg11928
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr30 | 8136107 | 8137375 | + | jg11928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 47,691.07 Da | 37.45 | 78.34 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 313 | 412 | 9.2E-35 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 159 | 207 | 1.3E-8 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 59 | 263 | 2.6E-24 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 163 | 197 | 1.5E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 160 | 195 | 10.950397 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 307 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14050.2 | - | 0 |
| RefSeq | XP_011083916.1 | pentatricopeptide repeat-containing protein At2g15690 [Sesamum indicum] | 0 |
| O23266 | Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H13 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9TL58 | pentatricopeptide repeat-containing protein At2g15690 OS=Sesamum indicum OX=4182 GN=LOC105166305 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology