Basic Information
Locus ID:
jg11697
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr30 | 6159396 | 6161579 | + | jg11697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 33,009.25 Da | 40.81 | 66.60 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 2.76582E-43 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 209 | 273 | 3.98495E-21 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 33 | 116 | 3.7E-20 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 209 | 276 | 9.4E-13 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 22 | 122 | 1.01E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 206 | 278 | 2.36E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 195 | 284 | 3.0E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 21 | 130 | 2.9E-27 | IPR036431 |
| SMART | SM00398 | hmgende2 | 208 | 277 | 2.3E-14 | IPR009071 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 5.7E-33 | - |
| SMART | SM00501 | bright_3 | 30 | 121 | 3.0E-33 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 26.566542 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 209 | 276 | 14.925637 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 215 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_011083407.1 | high mobility group B protein 9 [Sesamum indicum] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TF29 | high mobility group B protein 9 OS=Sesamum indicum OX=4182 GN=LOC105165948 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology