Basic Information
Locus ID:
jg11167
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 11414560 | 11431896 | - | jg11167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.81 | 168,062.98 Da | 49.92 | 70.14 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 891 | 951 | 0.00116812 | - |
| CDD | cd15532 | PHD2_CHD_II | 699 | 738 | 8.79059E-18 | - |
| Pfam | PF00475 | Imidazoleglycerol-phosphate dehydratase | 1433 | 1479 | 5.4E-5 | IPR000807 |
| Pfam | PF00628 | PHD-finger | 699 | 741 | 5.7E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 621 | 671 | 1.0E-22 | IPR032308 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 1433 | 1477 | 1.65E-5 | IPR020568 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 883 | 970 | 5.12E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 688 | 744 | 1.4E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.230.40 | Imidazole glycerol phosphate dehydratase; domain 1 | 1415 | 1500 | 3.8E-6 | IPR038494 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 687 | 792 | 1.7E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 698 | 739 | 6.1E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 696 | 741 | 10.175301 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 699 | 738 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1365 | 1388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1031 | 1045 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1049 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 310 | - | - |
| Coils | Coil | Coil | 453 | 473 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_011071579.1 | uncharacterized protein LOC105156993 [Sesamum indicum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SQV3 | uncharacterized protein LOC105156993 OS=Sesamum indicum OX=4182 GN=LOC105156993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology