Basic Information
Locus ID:
jg10852
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 3804450 | 3810791 | - | jg10852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 68,955.23 Da | 40.61 | 96.88 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 306 | 577 | 2.7E-44 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 69 | 1.3E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 169 | 185 | 2.0 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 284 | 580 | 2.56E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 193 | 7.48E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 274 | 381 | 4.2E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 215 | 1.1E-61 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 382 | 599 | 7.1E-71 | - |
| SMART | SM00220 | serkin_6 | 305 | 579 | 5.6E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 305 | 592 | 36.513081 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 428 | 440 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 311 | 333 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_019237009.1 | PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana attenuata] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J6JY72 | Somatic embryogenesis receptor kinase 2 OS=Nicotiana attenuata OX=49451 GN=SERK2_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology