Basic Information
Locus ID:
jg10796
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 3245942 | 3254290 | - | jg10796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 125,264.62 Da | 53.64 | 66.11 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 614 | 915 | 1.8E-44 | IPR001394 |
| Pfam | PF01753 | MYND finger | 93 | 130 | 5.1E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 90 | 133 | 9.77E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 610 | 921 | 9.42E-83 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 608 | 927 | 7.6E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 82 | 134 | 4.1E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 93 | 130 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 613 | 918 | 51.576199 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 614 | 629 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 93 | 130 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1120 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 427 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_011074221.1 | ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Sesamum indicum] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T1X4 | ubiquitin carboxyl-terminal hydrolase 16 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105158986 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology