Basic Information
Locus ID:
jg10780
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 2991121 | 3000755 | - | jg10780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 62,921.68 Da | 58.66 | 79.44 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 291 | 339 | 1.46914E-15 | - |
| Pfam | PF12906 | RING-variant domain | 291 | 338 | 5.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 287 | 342 | 3.93E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 346 | 1.7E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 290 | 339 | 2.9E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 283 | 345 | 18.929001 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 566 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020548529.1 | uncharacterized protein LOC105159050 [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9HLY1 | Protein involved in mRNA turnover and stability OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08808 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology