Basic Information
Locus ID:
jg10573
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
SH3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr21 | 1225192 | 1228476 | + | jg10573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 43,334.53 Da | 45.84 | 82.88 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 307 | 355 | 3.2E-11 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 305 | 361 | 6.04E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 46 | 257 | 4.88E-23 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 299 | 365 | 1.1E-15 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 44 | 267 | 7.1E-10 | IPR027267 |
| SMART | SM00326 | SH3_2 | 303 | 358 | 1.3E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 300 | 359 | 19.714348 | IPR001452 |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 325 | 341 | 2.4E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 341 | 354 | 2.4E-5 | - |
| PRINTS | PR00499 | Neutrophil cytosol factor 2 signature | 305 | 325 | 2.4E-5 | - |
| Coils | Coil | Coil | 192 | 212 | - | - |
| Coils | Coil | Coil | 219 | 239 | - | - |
| Coils | Coil | Coil | 148 | 168 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_011074634.1 | SH3 domain-containing protein 2 [Sesamum indicum] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SVM1 | SH3 domain-containing protein 2 OS=Sesamum indicum OX=4182 GN=LOC105159318 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology