Basic Information
Locus ID:
jg10276
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 14603078 | 14610429 | - | jg10276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 120,392.77 Da | 44.84 | 105.04 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 337 | 378 | 2.85303E-19 | - |
| Pfam | PF04564 | U-box domain | 337 | 403 | 1.9E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 404 | 2.0E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 198 | 687 | 5.25E-20 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 577 | 1030 | 1.4E-39 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 410 | 3.3E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 941 | 1068 | 5.9E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 604 | 928 | 1.1E-31 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 411 | 603 | 7.3E-18 | IPR011989 |
| SMART | SM00185 | arm_5 | 437 | 477 | 42.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 520 | 561 | 240.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 946 | 986 | 140.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 336 | 399 | 3.5E-27 | IPR003613 |
| SMART | SM00185 | arm_5 | 603 | 643 | 6.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 990 | 1030 | 5.1 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 332 | 406 | 34.455765 | IPR003613 |
| Coils | Coil | Coil | 270 | 297 | - | - |
| Coils | Coil | Coil | 215 | 235 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_047959874.1 | U-box domain-containing protein 43-like [Salvia hispanica] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HV59 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |