Basic Information
Locus ID:
jg10251
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 14433598 | 14436328 | - | jg10251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 41,594.90 Da | 66.46 | 69.76 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 319 | 361 | 8.9E-12 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 30 | 97 | 6.5E-17 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 312 | 364 | 1.06E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 366 | 2.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 319 | 360 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 361 | 12.636808 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011084501.1 | putative RING-H2 finger protein ATL21A [Sesamum indicum] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9TJZ1 | putative RING-H2 finger protein ATL21A OS=Sesamum indicum OX=4182 GN=LOC105166740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology