Basic Information
Locus ID:
jg10219
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 14058184 | 14064924 | - | jg10219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 93,404.27 Da | 46.59 | 85.16 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 560 | 693 | 1.52276E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 714 | 758 | 2.3E-12 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 562 | 692 | 4.6E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 522 | 761 | 1.41E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 694 | 771 | 8.6E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 521 | 693 | 8.6E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 558 | 695 | 1.3E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 665 | 684 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 499 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_011084471.1 | uncharacterized protein LOC105166715 [Sesamum indicum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9THC8 | uncharacterized protein LOC105166715 OS=Sesamum indicum OX=4182 GN=LOC105166715 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology