Basic Information
Locus ID:
jg10154
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 13671623 | 13679507 | - | jg10154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.55 | 52,551.90 Da | 33.61 | 80.54 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 341 | 4.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 302 | 0.0099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 181 | 0.0054 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 115 | 135 | 1.8E-7 | IPR041367 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 145 | 425 | 1.77E-45 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 111 | 136 | 4.84E-7 | IPR036855 |
| Gene3D | G3DSA:3.30.1370.210 | - | 15 | 64 | 3.7E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 287 | 4.8E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 288 | 434 | 8.8E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 265 | 302 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 389 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 342 | 4.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 258 | 13.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 113 | 137 | 3.3E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 27 | 52 | 0.56 | IPR000571 |
| SMART | SM00320 | WD40_4 | 142 | 181 | 0.0018 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 305 | 9.071966 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 149 | 181 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 311 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 341 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 149 | 190 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 11.131343 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 111 | 138 | 13.816626 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 168 | 182 | 3.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 3.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 289 | 303 | 3.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_011101170.1 | zinc finger CCCH domain-containing protein 48 [Sesamum indicum] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UKZ7 | zinc finger CCCH domain-containing protein 48 OS=Sesamum indicum OX=4182 GN=LOC105179254 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology