Basic Information
Locus ID:
gene_9979
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 34705518 | 34708227 | - | gene_9979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 43,976.59 Da | 41.86 | 84.22 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 18 | 52 | 6.5E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 58 | 1.44E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 58 | 1.3E-7 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 305 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30200.1 | F-box family protein. | 0 |
| RefSeq | XP_021751536.1 | F-box protein At1g30200-like [Chenopodium quinoa] | 0 |
| Q9C534 | F-box protein At1g30200 OS=Arabidopsis thaliana OX=3702 GN=At1g30200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9CZP3 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35596, jg8531 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9979 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17847, Sbi_jg62472 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1046 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007188 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008296, gene:ENSEOMG00000030339 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002060, CQ.Regalona.r1.4BG0002140 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G15419 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017226 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15666 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.583, evm.TU.LG08.1756, evm.TU.LG11.867 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626410 |