Basic Information
Locus ID:
gene_9857
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 61082350 | 61091997 | + | gene_9857 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 41,277.86 Da | 52.94 | 79.23 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.24265E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 150 | 188 | 3.0E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 341 | 376 | 5.9E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 261 | 316 | 1.7E-23 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.9E-19 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 9.44E-23 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 258 | 322 | 2.09E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 148 | 198 | 3.51E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 323 | 382 | 9.19E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 252 | 316 | 5.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 143 | 193 | 4.7E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 4.6E-28 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 333 | 381 | 2.1E-23 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.1E-21 | IPR000626 |
| SMART | SM00727 | CBM | 259 | 302 | 1.4E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 341 | 378 | 1.0E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 150 | 190 | 6.9E-7 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 382 | 2.7E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 338 | 379 | 13.727652 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 18.889368 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 148 | 191 | 11.82398 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 382 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 351 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 366 | 4.4E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 287 | 309 | 4.4E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 128 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_042970167.1 | ubiquitin receptor RAD23c-like isoform X2 [Carya illinoinensis] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A1Q3C6B9 | Ubiquitin receptor RAD23 OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19139 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology