Basic Information
Locus ID:
gene_9814
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 30397188 | 30400370 | - | gene_9814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 19,593.69 Da | 58.78 | 70.81 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 125 | 166 | 3.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 168 | 5.18E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 169 | 8.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 126 | 165 | 9.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 166 | 12.799091 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G30460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049391625.1 | probable E3 ubiquitin-protein ligase HIP1 [Solanum stenotomum] | 0 |
| TrEMBL | A0A2P2KX91 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_16691, gene_18522, gene_19539, gene_19766, gene_9814 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg52837 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9037 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717452 |
| Solanaceae | Solanum chilense | 1 | SOLCI004904300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007023 |