Basic Information
Locus ID:
gene_9801
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
polyribonucleotide nucleotidyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 30090281 | 30114691 | - | gene_9801 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 105,365.10 Da | 41.38 | 85.68 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11364 | RNase_PH_PNPase_2 | 377 | 605 | 9.21631E-127 | - |
| CDD | cd11363 | RNase_PH_PNPase_1 | 58 | 285 | 1.86891E-120 | - |
| Pfam | PF01138 | 3' exoribonuclease family, domain 1 | 377 | 510 | 9.9E-22 | IPR001247 |
| Pfam | PF01138 | 3' exoribonuclease family, domain 1 | 67 | 196 | 8.6E-19 | IPR001247 |
| Pfam | PF03725 | 3' exoribonuclease family, domain 2 | 199 | 261 | 6.8E-13 | IPR015847 |
| Pfam | PF03726 | Polyribonucleotide nucleotidyltransferase, RNA binding domain | 295 | 374 | 1.9E-17 | IPR015848 |
| Pfam | PF00575 | S1 RNA binding domain | 677 | 747 | 1.0E-11 | IPR003029 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 615 | 698 | 9.21E-10 | IPR036612 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 355 | 553 | 2.94E-47 | IPR020568 |
| SUPERFAMILY | SSF55666 | Ribonuclease PH domain 2-like | 504 | 607 | 1.54E-24 | IPR036345 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 670 | 752 | 2.17E-17 | IPR012340 |
| SUPERFAMILY | SSF55666 | Ribonuclease PH domain 2-like | 190 | 283 | 2.1E-21 | IPR036345 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 55 | 196 | 2.78E-42 | IPR020568 |
| SUPERFAMILY | SSF46915 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 278 | 380 | 1.83E-23 | IPR036456 |
| Gene3D | G3DSA:2.40.50.140 | - | 677 | 750 | 1.9E-20 | - |
| Gene3D | G3DSA:3.30.1370.10 | K Homology domain, type 1 | 610 | 673 | 8.2E-10 | IPR036612 |
| Gene3D | G3DSA:3.30.230.70 | - | 55 | 288 | 7.0E-75 | IPR027408 |
| Gene3D | G3DSA:3.30.230.70 | - | 289 | 609 | 1.9E-119 | IPR027408 |
| SMART | SM00316 | S1_6 | 901 | 964 | 0.022 | IPR022967 |
| SMART | SM00316 | S1_6 | 678 | 748 | 1.7E-18 | IPR022967 |
| TIGRFAM | TIGR03591 | polynuc_phos: polyribonucleotide nucleotidyltransferase | 64 | 749 | 4.4E-237 | IPR012162 |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 611 | 669 | 8.743324 | - |
| ProSiteProfiles | PS50126 | S1 domain profile. | 680 | 748 | 17.051323 | IPR003029 |
| Hamap | MF_01595 | Polyribonucleotide nucleotidyltransferase [pnp]. | 56 | 751 | 25.369549 | IPR012162 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 801 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 829 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 879 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14580.1 | polyribonucleotide nucleotidyltransferase, putative. | 0 |
| RefSeq | XP_021725109.1 | polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Chenopodium quinoa] | 0 |
| Q9S7G6 | Polyribonucleotide nucleotidyltransferase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PNP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R611 | polyribonucleotide nucleotidyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_102720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17778, jg40385 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9801 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016421 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40668, Sbi_jg50675 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2229 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016587 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl44071, Sgl44073, Sgl48837, Sgl48838 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000035234 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0011440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022740 |
| Apiaceae | Apium graveolens | 1 | Ag9G00462 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711579 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.711.V1.1, AsparagusV1_09.1432.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G02407 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012572m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g048170.2N, BniB08g007020.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1854 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1935 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1098s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g15940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.331 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027857 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34570 |
| Poaceae | Echinochloa crus-galli | 2 | AH07.2622, CH07.2504 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0137560, gene-QOZ80_2BG0193190 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0595200.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023634 |
| Poaceae | Oryza coarctata | 2 | Oco03G015400, Oco04G016040 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g40460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G198400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204177, Pt_Chr0204677 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr09G025780, Chr0G011210, Chr12G023980, Chr13G007380 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G431400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG034660, gene_TRIDC6BG041310 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G228100.1, TraesCS6B02G253600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb247190_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9473 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13902 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.1564, evm.TU.LG07.1233, evm.TU.LG20.795 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1907 |
| Rhizophoraceae | Carallia pectinifolia | 7 | nbisL1-mrna-2354, nbisL1-mrna-2364, nbisL1-mrna-2368 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6759 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3076 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002093 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12047 |
| Salicaceae | Populus euphratica | 1 | populus_peu01056 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621839 |
| Solanaceae | Solanum chilense | 1 | SOLCI001041000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008916 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14705 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3599 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07070.v3.1 |