Basic Information
Locus ID:
gene_9757
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein At3g23880-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 28504989 | 28506431 | - | gene_9757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 51,133.90 Da | 50.56 | 83.04 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 51 | 4.6E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 64 | 7.72E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 52 | 3.8E-8 | - |
| SMART | SM00256 | fbox_2 | 15 | 54 | 1.5E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 115 | 366 | 1.4E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 55 | 11.00765 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_038678540.1 | F-box/kelch-repeat protein At3g06240-like isoform X1 [Tripterygium wilfordii] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A484KI55 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS5370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_11648, gene_11649, gene_12920, gene_25916, gene_9757 |