Basic Information
Locus ID:
gene_9755
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 29001378 | 29055171 | + | gene_9755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 113,099.12 Da | 53.23 | 79.13 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 263 | 606 | 5.63363E-82 | - |
| CDD | cd18793 | SF2_C_SNF | 867 | 976 | 3.35067E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 283 | 682 | 1.6E-66 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 870 | 967 | 2.0E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 252 | 606 | 2.34E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 713 | 782 | 2.29E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 614 | 1024 | 3.23E-55 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 688 | 785 | 1.2E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 371 | 464 | 5.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 787 | 1026 | 3.2E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 498 | 617 | 3.4E-30 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 239 | 323 | 9.5E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 259 | 576 | 2.8E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 884 | 967 | 2.2E-17 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 856 | 1020 | 14.248459 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 721 | 760 | 11.087743 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 388 | 568 | 11.206985 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 736 | 745 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 496 | - | - |
| Coils | Coil | Coil | 980 | 1000 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_052204701.1 | helicase-like transcription factor CHR28 isoform X2 [Diospyros lotus] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BEX3 | Helicase-like transcription factor CHR28 OS=Davidia involucrata OX=16924 GN=Din_036227 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology