Basic Information
Locus ID:
gene_9739
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 20407828 | 20423302 | + | gene_9739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 63,373.45 Da | 31.29 | 90.24 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 392 | 573 | 1.77264E-87 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 32 | 193 | 6.88336E-92 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 229 | 343 | 2.0E-19 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 437 | 561 | 2.5E-13 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 29 | 197 | 5.3E-35 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 29 | 205 | 1.2E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 221 | 368 | 1.79E-30 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 392 | 585 | 3.57E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 215 | 378 | 2.7E-38 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 384 | 575 | 1.1E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 27 | 202 | 3.9E-60 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 24 | 585 | 7.9E-206 | IPR012110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | NP_001275795.1 | pyruvate decarboxylase [Citrus sinensis] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067GDY7 | pyruvate decarboxylase OS=Citrus sinensis OX=2711 GN=CISIN_1g007800mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology