Basic Information
Locus ID:
gene_9726
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 27097926 | 27106392 | - | gene_9726 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 48,380.57 Da | 40.96 | 112.42 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 19 | 413 | 8.07068E-55 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 53 | 374 | 1.0E-19 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 53 | 420 | 4.58E-35 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 29 | 421 | 3.2E-34 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 420 | 10.505499 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_010681370.2 | hippocampus abundant transcript-like protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| P51563 | Tetracycline resistance protein, class G OS=Vibrio anguillarum OX=55601 GN=tetA PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C8YLQ5 | MFS domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology