Basic Information
Locus ID:
gene_9725
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 27067167 | 27078751 | - | gene_9725 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 48,741.89 Da | 44.91 | 110.88 | 0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 49 | 417 | 1.52283E-48 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 57 | 378 | 2.9E-21 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 57 | 420 | 3.01E-34 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 7 | 424 | 5.3E-33 | IPR036259 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 75 | 1.2E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 362 | 385 | 1.2E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 302 | 323 | 1.2E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 87 | 111 | 1.2E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_021718248.1 | hippocampus abundant transcript-like protein 1 [Chenopodium quinoa] | 0 |
| P51563 | Tetracycline resistance protein, class G OS=Vibrio anguillarum OX=55601 GN=tetA PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C8YLQ5 | MFS domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology