Basic Information
Locus ID:
gene_9663
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 24716173 | 24725409 | - | gene_9663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 98,728.61 Da | 66.78 | 67.01 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 807 | 846 | 8.82472E-22 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 805 | 851 | 1.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 806 | 852 | 5.05E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 783 | 857 | 2.1E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 807 | 846 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 79 | - | - |
| Coils | Coil | Coil | 738 | 758 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021858180.1 | uncharacterized protein LOC110797374 [Spinacia oleracea] | 0 |
| TrEMBL | A0A7C9ASD0 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology