Basic Information
Locus ID:
gene_9658
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 24499716 | 24539689 | - | gene_9658 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 150,884.97 Da | 52.15 | 81.56 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 876 | 906 | 6.37858E-4 | IPR001202 |
| CDD | cd10845 | DSRM_RNAse_III_family | 643 | 704 | 2.20014E-11 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 145 | 363 | 6.5E-8 | IPR004274 |
| Pfam | PF04937 | Protein of unknown function (DUF 659) | 1174 | 1335 | 2.0E-49 | IPR007021 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 644 | 705 | 1.9E-5 | IPR014720 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1196 | 1338 | 8.34E-11 | IPR012337 |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 389 | 9.89E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 641 | 707 | 2.32E-14 | - |
| SUPERFAMILY | SSF51045 | WW domain | 870 | 908 | 1.44E-7 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 866 | 913 | 2.7E-5 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 132 | 416 | 2.4E-27 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 640 | 713 | 3.3E-11 | - |
| SMART | SM00577 | forpap2 | 197 | 373 | 1.3E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 644 | 708 | 2.4E-8 | IPR014720 |
| SMART | SM00456 | ww_5 | 874 | 907 | 1.8E-5 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 873 | 907 | 10.9944 | IPR001202 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 643 | 709 | 14.247353 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 138 | 386 | 16.576342 | IPR004274 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 879 | 905 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 984 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_048491226.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RJ10 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_067230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology