Basic Information
Locus ID:
gene_9657
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 24489624 | 24503986 | - | gene_9657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 93,047.27 Da | 55.93 | 71.58 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 515 | 644 | 2.96765E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 320 | 490 | 2.1E-50 | IPR011545 |
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 200 | 268 | 9.8E-11 | IPR008906 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 527 | 635 | 1.4E-33 | IPR001650 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1 | 271 | 1.14E-31 | IPR012337 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 368 | 650 | 2.05E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 507 | 676 | 7.0E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 271 | 506 | 4.3E-88 | IPR027417 |
| SMART | SM00487 | ultradead3 | 315 | 518 | 1.1E-66 | IPR014001 |
| SMART | SM00490 | helicmild6 | 555 | 635 | 2.0E-34 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 296 | 324 | 11.00874 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 530 | 674 | 25.676182 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 327 | 501 | 31.508999 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 447 | 455 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 806 | 823 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 823 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 741 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_010694510.1 | ATP-dependent RNA helicase-like protein DB10 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AIL9 | RNA helicase (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology