Basic Information
Locus ID:
gene_9588
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 20236458 | 20238708 | - | gene_9588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 23,220.25 Da | 24.61 | 66.06 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 58 | 126 | 9.0E-9 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 9 | 128 | 8.2E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 208 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021859321.1 | replication protein A 70 kDa DNA-binding subunit B-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A835M8U7 | Nucleic acid-binding, OB-fold protein OS=Coptis chinensis OX=261450 GN=IFM89_021366 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology