Basic Information
Locus ID:
gene_9496
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 15443817 | 15450918 | - | gene_9496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 69,368.40 Da | 40.15 | 87.54 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 31 | 120 | 8.3E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 214 | 466 | 6.2E-88 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 24 | 119 | 1.73E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 14 | 122 | 4.8E-13 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 214 | 490 | 86.224922 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 32 | 100 | 10.323363 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 527 | - | - |
| Coils | Coil | Coil | 529 | 549 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_021852174.1 | BTB/POZ domain-containing protein NPY2 [Spinacia oleracea] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMP3 | NPH3 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_167010 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology