Basic Information
Locus ID:
gene_9445
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Glycine-rich domain-containing protein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 12743585 | 12749343 | - | gene_9445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 99,297.89 Da | 26.96 | 68.54 | -0.32 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22660.3 | - | 0 |
| RefSeq | XP_010683055.2 | glycine-rich domain-containing protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZQ47 | Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=GRDP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AAF7 | Glycine-rich domain-containing protein 1 (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30759 |
| Aizoaceae | Mesembryanthemum crystallinum | 16 | gene_11039, gene_11041, gene_11042, gene_11044, gene_11110 ... |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012951 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152880 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg43027, Sbi_jg43028, Sbi_jg43035, Sbi_jg45629 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg11474, Seu_jg11480, Seu_jg11481 |
| Amaranthaceae | Suaeda aralocaspica | 6 | GOSA_00006932, GOSA_00016889, GOSA_00016899, GOSA_00016900 ... |
| Amaranthaceae | Suaeda glauca | 20 | Sgl12745, Sgl17988, Sgl34025, Sgl34066, Sgl34275, Sgl35599 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000311, gene:ENSEOMG00000013168 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0009620, CQ.Regalona.r1.1AG0010220 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30204200 |
| Apiaceae | Apium graveolens | 2 | Ag5G00379, Ag5G00382 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G008660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701943 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2174.V1.1, AsparagusV1_07.3643.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G21684, Ftri18G15253, Ftri18G31316 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G78030.1, AT2G22660.2, AT4G37682.1, AT4G37900.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000046m.g.v1.0, Thhalv10012182m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g35220.v2.2, Sp4g01683.v2.2, Sp7g35540.v2.2 |
| Brassicaceae | Brassica nigra | 11 | BniB01g021340.2N, BniB02g019470.2N, BniB02g019480.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0392 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0401 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00430 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g12930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10599 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2652 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023244 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06002, Lb7G34712, Lb7G34715 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.2014, BH04.2039, CH04.2381 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0689950, gene-QOZ80_9BG0714790 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0221340.1, HORVU.MOREX.r3.7HG0735950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065896 |
| Poaceae | Oryza coarctata | 1 | Oco22G009860 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g40590.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G212400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103305 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr16G004630 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G039300, Tel7E01G787300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1BG066540, gene_TRIDC3AG000890 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G022700.1, TraesCS3B02G022500.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb166550_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43163 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18211 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG02.1898, evm.TU.LG02.1903, evm.TU.LG04.435 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04480 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1150, evm.TU.Scaffold_6_RagTag.1729 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17427, nbisL1-mrna-823 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1308, nbisL1-mrna-449 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12037, nbisL1-mrna-2404 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1052, evm.TU.utg000019l.551 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001881, Maker00007043 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15408, nbisL1-mrna-6164 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1844, nbisL1-mrna-3355 |
| Salicaceae | Populus euphratica | 4 | populus_peu05323, populus_peu28297, populus_peu28298 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621069, gene-LOC132622789 |
| Solanaceae | Solanum chilense | 2 | SOLCI000782000, SOLCI004558700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010938, gene-LOC107011120 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15592, gene_15593 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0273 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06750.v3.1 |