Basic Information
Locus ID:
gene_937
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 63897836 | 63917143 | + | gene_937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 67,528.41 Da | 49.58 | 70.10 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 17 | 47 | 2.1032E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 364 | 493 | 8.44114E-65 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 169 | 338 | 1.2E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 375 | 484 | 8.0E-35 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 217 | 501 | 1.06E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 8 | 48 | 1.88E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 11 | 61 | 2.5E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 356 | 525 | 3.2E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 121 | 355 | 8.9E-88 | IPR027417 |
| SMART | SM00456 | ww_5 | 15 | 48 | 6.9E-6 | IPR001202 |
| SMART | SM00490 | helicmild6 | 404 | 484 | 1.5E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 164 | 367 | 2.3E-66 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 176 | 350 | 31.559298 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 14 | 48 | 10.9747 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 379 | 523 | 26.413132 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 145 | 173 | 10.768872 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 296 | 304 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 20 | 46 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 590 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_012072496.1 | DEAD-box ATP-dependent RNA helicase 46 [Jatropha curcas] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067LD75 | ATP-dependent RNA helicase-like protein DB10 OS=Jatropha curcas OX=180498 GN=JCGZ_10276 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology