Basic Information
Locus ID:
gene_9165
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 30313098 | 30320257 | + | gene_9165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 166,380.48 Da | 37.42 | 107.27 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 928 | 1222 | 1.16092E-89 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 629 | 829 | 3.97961E-108 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 316 | 603 | 3.63167E-100 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1245 | 1465 | 2.52268E-122 | - |
| Pfam | PF00005 | ABC transporter | 647 | 781 | 4.5E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 318 | 582 | 8.7E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1264 | 1412 | 6.5E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 931 | 1172 | 5.1E-29 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 306 | 613 | 5.89E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1239 | 1476 | 2.05E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 929 | 1229 | 9.16E-52 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 628 | 851 | 3.66E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 614 | 874 | 1.3E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 294 | 611 | 1.5E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1230 | 1483 | 8.7E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 892 | 1228 | 1.1E-58 | IPR036640 |
| SMART | SM00382 | AAA_5 | 656 | 829 | 1.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1273 | 1458 | 6.4E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 629 | 852 | 21.802166 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 930 | 1210 | 36.267303 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 315 | 595 | 33.149006 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1247 | 1481 | 18.707611 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 754 | 768 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 902 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034678524.1 | ABC transporter C family member 3-like [Vitis riparia] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IEY6 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_008956 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology