Basic Information
Locus ID:
gene_9125
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Phosphoinositide 3-kinase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 4067279 | 4077525 | - | gene_9125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 173,613.80 Da | 52.05 | 87.92 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13980 | STKc_Vps15 | 16 | 303 | 2.48773E-165 | - |
| Pfam | PF00069 | Protein kinase domain | 29 | 292 | 7.8E-20 | IPR000719 |
| Pfam | PF02985 | HEAT repeat | 539 | 567 | 1.8E-4 | IPR000357 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1128 | 1164 | 8.8E-7 | IPR001680 |
| SUPERFAMILY | SSF48371 | ARM repeat | 280 | 834 | 1.08E-32 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 26 | 313 | 3.1E-39 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1126 | 1551 | 3.0E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1094 | 1173 | 1.1E-8 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 23 | 385 | 2.0E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 622 | 849 | 6.4E-15 | IPR011989 |
| Gene3D | G3DSA:2.130.10.10 | - | 1174 | 1333 | 6.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1341 | 1551 | 2.1E-9 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 480 | 621 | 2.6E-10 | IPR011989 |
| SMART | SM00320 | WD40_4 | 1506 | 1551 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1175 | 1212 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1278 | 1316 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1125 | 1164 | 2.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1423 | 1457 | 170.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 27 | 295 | 1.0E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 27 | 307 | 21.77132 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1132 | 1164 | 12.367405 | - |
| ProSiteProfiles | PS50077 | HEAT repeat profile. | 539 | 571 | 8.8312 | IPR021133 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1132 | 1164 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1518 | 1551 | 9.810144 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1518 | 1551 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 145 | 157 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29380.1 | protein kinase family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010688347.1 | serine/threonine-protein kinase VPS15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M0E5 | Serine/threonine-protein kinase VPS15 OS=Arabidopsis thaliana OX=3702 GN=VPS15 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RNX7 | non-specific serine/threonine protein kinase OS=Spinacia oleracea OX=3562 GN=SOVF_044880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31661 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9125 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014666 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g197640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25085, Sbi_jg8931 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19665 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007712, GOSA_00014470 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42324, Sgl42361, Sgl47098 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010407, gene:ENSEOMG00000032907 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0016740, CQ.Regalona.r1.8AG0019210 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30257460 |
| Apiaceae | Apium graveolens | 5 | Ag5G01593, Ag5G01594, Ag5G01595, Ag5G01596, Ag8G00324 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724252 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.775.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G10793 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29380.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024212m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27250.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1569 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1628 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19760 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0353s00010.v1.0, Dusal.0353s00013.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02000 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1291, evm.TU.LG07.1165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039668 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G26415, Lb5G26416, Lb5G26417 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3788, BH07.3608, CH07.3684 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149040, gene-QOZ80_2BG0205210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0624570.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G024280, Oco04G024740 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g55340.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G188700, gene-BS78_04G166200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206297 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G017650, Chr13G001830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G640500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG053930, gene_TRIDC6BG062800 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G360100.2, TraesCS6B02G393000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192340_P002, Zm00001eb257890_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8425 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14626 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2791, evm.TU.LG03.2042, evm.TU.LG14.343 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1891 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25694 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15219 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4667 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1078 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001255 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14804 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1178 |
| Salicaceae | Populus euphratica | 1 | populus_peu09190 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613469 |
| Solanaceae | Solanum chilense | 1 | SOLCI005936100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017746 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8037 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G1503, TC12G1319 |
| Zosteraceae | Zostera marina | 2 | Zosma01g16780.v3.1, Zosma04g25780.v3.1 |