Basic Information
Locus ID:
gene_9115
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 3874556 | 3877388 | - | gene_9115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 23,249.22 Da | 43.00 | 82.93 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 49 | 91 | 6.1E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 156 | 199 | 3.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 205 | 1.41E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 97 | 1.04E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 214 | 1.1E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 107 | 5.2E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 198 | 4.6E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 155 | 199 | 0.0079 | IPR011016 |
| SMART | SM00184 | ring_2 | 49 | 90 | 6.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 49 | 91 | 12.577796 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 199 | 13.330199 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46620.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021837244.1 | E3 ubiquitin-protein ligase RZF1-like [Spinacia oleracea] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QEJ2 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_188000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31653, jg32975 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_9114, gene_9115, gene_9116 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014636 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_8g197390, BVRB_8g197400, BVRB_8g197420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25057, Sbi_jg25058, Sbi_jg8905, Sbi_jg8906 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19692, Seu_jg19693 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007729, GOSA_00007730 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl42298, Sgl42299, Sgl42300, Sgl47073, Sgl47074, Sgl47075 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046235 |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.8AG0019470, CQ.Regalona.r1.8AG0019480 ... |
| Apiaceae | Apium graveolens | 2 | Ag10G01505, Ag10G01506 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.403.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G09071, Ftri14G13975, Ftri4G15712 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G30460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005099m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g18190.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g069060.2N, BniB07g036930.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g03860 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003463 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.456, AH02.3821, BH01.285, BH02.3833, BH07.4143 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0038480, gene-QOZ80_1BG0088420 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469700.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004057 |
| Poaceae | Oryza coarctata | 2 | Oco05G007840, Oco17G001140 |
| Poaceae | Oryza sativa | 3 | LOC_Os09g06740.1, LOC_Os09g06770.1, LOC_Os09g27380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G473600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705057 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G022220, Chr04G022230, Chr06G023980, Chr06G023990 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G283400, Tel7E01G900000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG027500, gene_TRIDC5BG028900 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G167100.1.cds1, TraesCS5B02G164100.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb257980_P001 |
| Poaceae | Zoysia japonica | 6 | nbis-gene-25639, nbis-gene-25643, nbis-gene-46362 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g24738, Zma_g24740, Zma_g25498 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2807, evm.TU.LG23.1012 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.459 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13064, nbisL1-mrna-23655 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12720 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16856 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000033l.102 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015047 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18348 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8248 |
| Salicaceae | Populus euphratica | 3 | populus_peu05398, populus_peu11952, populus_peu37477 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132637983, gene-LOC132642548 |
| Solanaceae | Solanum chilense | 3 | SOLCI004118400, SOLCI004479000, SOLCI005953500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005918 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1482 |