Basic Information
Locus ID:
gene_9106
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 3587426 | 3592184 | - | gene_9106 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 58,795.40 Da | 68.67 | 71.46 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 119 | 162 | 1.25481E-17 | - |
| Pfam | PF13639 | Ring finger domain | 119 | 162 | 4.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 168 | 2.78E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 170 | 8.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 6.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 400 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010688281.1 | E3 ubiquitin-protein ligase ATL42 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RH08 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_067600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology