Basic Information
Locus ID:
gene_9097
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
CAK1AT
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 3405512 | 3408799 | - | gene_9097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 53,742.71 Da | 47.49 | 87.64 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 292 | 422 | 1.7E-20 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 28 | 173 | 1.3E-34 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 24 | 438 | 8.78E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 21 | 209 | 7.9E-43 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 287 | 424 | 1.6E-34 | - |
| SMART | SM00220 | serkin_6 | 28 | 422 | 9.9E-82 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 28 | 422 | 38.44944 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 34 | 57 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 143 | 155 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28980.1 | CDK-activating kinase 1AT. Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription. | 0 |
| RefSeq | XP_021741493.1 | cyclin-dependent kinase F-1-like [Chenopodium quinoa] | 0 |
| O80345 | Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana OX=3702 GN=CDKF-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RFR6 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_077830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3830 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9097 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25006, Sbi_jg8858 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19744 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42246, Sgl47022 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010907, gene:ENSEOMG00000033246 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019960, CQ.Regalona.r1.8BG0022530 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256740 |
| Apiaceae | Apium graveolens | 1 | Ag5G01665 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G003930, COCNU_03G011920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702556, gene-LOC103715593 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1757.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G21507 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G28980.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025049m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g26920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1512 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1567 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g12040, gene.Cymno06g03240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1107 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003860 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34084 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1657, BH06.1611, CH06.1765 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0530820, gene-QOZ80_6BG0484670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0710600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033982 |
| Poaceae | Oryza coarctata | 2 | Oco11G009780, Oco12G009750 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g22820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G144500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400092 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G012870, Chr11G009350, Chr14G011520, Chr21G011780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G579100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG047890, gene_TRIDC7BG039560 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G342900.1, TraesCS7B02G240100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb278130_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35448 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32317 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2853, evm.TU.LG23.1053 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.433 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13103 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6589 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16826 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.290 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015196 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4089 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8277 |
| Salicaceae | Populus euphratica | 1 | populus_peu21944 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636800 |
| Solanaceae | Solanum chilense | 1 | SOLCI002063600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005203 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9321 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1302 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25230.v3.1 |