Basic Information
Locus ID:
gene_8979
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 1602898 | 1606616 | - | gene_8979 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 71,342.10 Da | 42.74 | 102.90 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 98 | 136 | 2.9E-6 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 287 | 310 | 0.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 581 | 603 | 0.5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 235 | 258 | 0.7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 362 | 625 | 3.69E-32 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 195 | 433 | 9.22E-36 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 93 | 134 | 4.58E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 155 | 271 | 8.7E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 571 | 664 | 4.0E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 91 | 137 | 3.6E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 552 | 2.0E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 272 | 469 | 1.0E-32 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 367 | 392 | 0.18 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 633 | 658 | 710.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 419 | 444 | 66.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 526 | 0.015 | IPR006553 |
| SMART | SM00256 | fbox_2 | 101 | 142 | 2.4E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 235 | 260 | 1.9E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 209 | 234 | 0.0068 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 261 | 286 | 3.7E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 581 | 605 | 0.008 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 528 | 553 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 607 | 632 | 0.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 393 | 418 | 3.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 555 | 580 | 2.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 287 | 312 | 0.0022 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_010687976.2 | EIN3-binding F-box protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LHA0 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology