Basic Information
Locus ID:
gene_8968
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 1396158 | 1414319 | - | gene_8968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 147,926.52 Da | 51.35 | 92.49 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 416 | 649 | 1.04E-5 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 12 | 842 | 3.14E-20 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 405 | 663 | 1.4E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 98 | 387 | 4.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 677 | 888 | 4.9E-9 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 719 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G33530.4 | - | 0 |
| RefSeq | XP_021760772.1 | WD repeat-containing protein 11-like [Chenopodium quinoa] | 0 |
| F1QEB7 | WD repeat-containing protein 11 OS=Danio rerio OX=7955 GN=wdr11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LH81 | Transducin family protein / WD-40 repeat family protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31695 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8968 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014314 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g194040 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25653, Sbi_jg9473 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19141 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010986 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41998, Sgl46774 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000010207, gene:ENSEOMG00000029375 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0000250, CQ.Regalona.r1.8AG0022240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30254930 |
| Apiaceae | Apium graveolens | 2 | Ag2G01814, AgUnG00116 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G000270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720999 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3044.V1.1, AsparagusV1_03.3045.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G05603, Ftri7G16487 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26610.1, AT3G33530.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011188m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g38940.v2.2, Sp1g41730.v2.2, Sp4g09400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g053490.2N, BniB08g032500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0600 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0620 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00410 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0240s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15490 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1680, evm.TU.LG07.937 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005512 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03260, Lb6G31726 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2470, AH07.322, BH07.420, CH03.4498 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101060, gene-QOZ80_2BG0154460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0556100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020180 |
| Poaceae | Oryza coarctata | 2 | Oco03G002070, Oco04G001910 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04440.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G032400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201544, Pt_Chr0201583 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G035200, Chr0G011630, Chr15G026550, Chr16G001620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G235400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG013570, gene_TRIDC6BG019050 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G104800.1, TraesCS6B02G134000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231770_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29992, nbis-gene-29993 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14920 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.40, evm.TU.LG16.1622, evm.TU.LG26.45 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g14480 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.2295, evm.TU.Scaffold_4_RagTag.2296 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25144 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20042 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5042 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1349 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000611 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1835 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22326, nbisL1-mrna-22327 |
| Salicaceae | Populus euphratica | 1 | populus_peu05746 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603153, gene-LOC132609253 |
| Solanaceae | Solanum chilense | 1 | SOLCI002474700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026090 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8076 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1293 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18730.v3.1 |