Basic Information
Locus ID:
gene_8952
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 1023798 | 1033347 | - | gene_8952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.65 | 63,347.68 Da | 29.63 | 100.67 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 441 | 537 | 3.60846E-28 | - |
| CDD | cd00030 | C2 | 264 | 366 | 9.64029E-24 | - |
| Pfam | PF00168 | C2 domain | 439 | 540 | 1.9E-25 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 4.5E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 366 | 4.6E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 436 | 558 | 1.11E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 1.34E-27 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 1.6E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 427 | 557 | 4.4E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 4.4E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 440 | 538 | 7.4E-25 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.335724 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 418 | 539 | 21.322803 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 19.504768 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 504 | 512 | 2.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 482 | 495 | 2.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 456 | 468 | 2.1E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010687878.1 | synaptotagmin-5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXK9 | Synaptotagmin-5-like OS=Spinacia oleracea OX=3562 GN=SOVF_135070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology