Basic Information
Locus ID:
gene_8947
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 886661 | 887358 | - | gene_8947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 12,987.90 Da | 38.61 | 93.31 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 41 | 108 | 1.6E-13 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 20 | 108 | 1.99E-18 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 29 | 113 | 5.3E-28 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 39 | 121 | 12.08953 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 45 | 69 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44200.1 | NIMA (never in mitosis, gene A)-related 6. Encodes AtNek5, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.Interacts physically with plant kinesins ARK1 and ARK2. Mutants show defects in root epidermal cell morphology, trichome branching and other epidermal cell abnormalities suggesting a rol e in epidermal cell differentiation. NEK6 co-localizes with cortical microtubules. | 0 |
| RefSeq | XP_048490874.1 | eukaryotic translation initiation factor 2-alpha kinase 1-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q19192 | Eukaryotic translation initiation factor 2-alpha kinase pek-1 OS=Caenorhabditis elegans OX=6239 GN=pek-1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A139IRG5 | Protein kinase domain-containing protein OS=Pseudocercospora musae OX=113226 GN=AC579_1997 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_5174, gene_6300, gene_8947 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0011330 |
| Apiaceae | Apium graveolens | 1 | Ag10G00818 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0137s00011.v1.0, Dusal.0200s00004.v1.0 |