Basic Information
Locus ID:
gene_8930
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 12855949 | 12906180 | + | gene_8930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 44,449.38 Da | 42.53 | 75.06 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 242 | 266 | 8.3E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 359 | 385 | 1.0E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 281 | 305 | 1.4E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 320 | 344 | 9.4E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 356 | 388 | 3.3E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 314 | 347 | 4.79E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 278 | 307 | 6.67E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 315 | 349 | 7.4E-15 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 355 | 389 | 3.9E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 276 | 310 | 3.8E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 236 | 271 | 2.7E-11 | - |
| SMART | SM00547 | zf_4 | 283 | 307 | 9.4E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 322 | 346 | 1.0E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 361 | 385 | 4.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 244 | 268 | 3.8E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 320 | 349 | 9.766264 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 242 | 271 | 9.156486 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 359 | 388 | 9.64205 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 281 | 310 | 9.529128 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 246 | 265 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 324 | 343 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 363 | 382 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_050256884.1 | zinc finger protein VAR3, chloroplastic isoform X2 [Quercus robur] | 0 |
| TrEMBL | A0A5J5BJ73 | Zinc finger protein VAR3, chloroplastic OS=Nyssa sinensis OX=561372 GN=F0562_023981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology