Basic Information
Locus ID:
gene_8908
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Transcriptional activator that binds specific DNA sequence
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 239603 | 250613 | - | gene_8908 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 116,827.59 Da | 41.94 | 80.25 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17584 | REC_typeB_ARR-like | 379 | 493 | 9.19123E-59 | - |
| Pfam | PF00249 | Myb-like DNA-binding domain | 571 | 618 | 6.1E-7 | IPR017930 |
| Pfam | PF00072 | Response regulator receiver domain | 379 | 487 | 1.4E-25 | IPR001789 |
| SUPERFAMILY | SSF52172 | CheY-like | 376 | 500 | 2.56E-36 | IPR011006 |
| SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 8 | 259 | 4.09E-38 | IPR029058 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 563 | 624 | 1.06E-18 | IPR009057 |
| Gene3D | G3DSA:3.40.50.1820 | alpha/beta hydrolase | 38 | 261 | 6.7E-28 | IPR029058 |
| Gene3D | G3DSA:1.10.10.60 | - | 564 | 625 | 4.1E-31 | - |
| Gene3D | G3DSA:3.40.50.2300 | - | 377 | 563 | 1.1E-39 | - |
| SMART | SM00448 | REC_2 | 377 | 489 | 8.5E-34 | IPR001789 |
| TIGRFAM | TIGR01557 | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 566 | 619 | 1.4E-22 | IPR006447 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 563 | 622 | 13.65631 | IPR017930 |
| ProSiteProfiles | PS50110 | Response regulatory domain profile. | 378 | 493 | 44.295464 | IPR001789 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 565 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31020.1 | alpha/beta-Hydrolases superfamily protein. | 0 |
| RefSeq | XP_010687734.2 | alpha/beta hydrolase domain-containing protein 17B [Beta vulgaris subsp. vulgaris] | 0 |
| B8B3I4 | Two-component response regulator ORR22 OS=Oryza sativa subsp. indica OX=39946 GN=RR22 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QSH6 | Hydrolase_4 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_146260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology