Basic Information
Locus ID:
gene_8905
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 217682 | 222844 | - | gene_8905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 81,557.97 Da | 46.81 | 94.73 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 353 | 653 | 3.00692E-158 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 38 | 336 | 9.49486E-157 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 358 | 649 | 6.2E-25 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 654 | 1.26E-43 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 37 | 336 | 6.8E-34 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 354 | 654 | 4.0E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 36 | 337 | 2.7E-28 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 353 | 654 | 27.987614 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 38 | 337 | 22.287304 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 0 |
| RefSeq | XP_021741895.1 | glycerophosphodiester phosphodiesterase GDPDL7-like [Chenopodium quinoa] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N884 | glycerophosphodiester phosphodiesterase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology