Basic Information
Locus ID:
gene_8872
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 8550828 | 8553464 | + | gene_8872 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 43,890.51 Da | 39.55 | 78.66 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 341 | 376 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 233 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 320 | 9.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 152 | 184 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 276 | 0.0011 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 15 | 85 | 3.2E-21 | IPR022052 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 379 | 8.79E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 389 | 1.8E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 144 | 184 | 2.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 233 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 320 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 135 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 276 | 8.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 377 | 8.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 378 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 187 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 193 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 236 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 278 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 242 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 322 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 322 | 10.601049 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 171 | 185 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 307 | 321 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 307 | 321 | 8.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 171 | 185 | 8.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 8.5E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_028068228.1 | WD-40 repeat-containing protein MSI3-like [Camellia sinensis] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5BSR0 | CAF1C_H4-bd domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology