Basic Information
Locus ID:
gene_8712
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 2900156 | 2906916 | + | gene_8712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 85,752.53 Da | 43.06 | 85.21 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 354 | 404 | 2.1E-10 | IPR005174 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 677 | 718 | 1.4E-9 | IPR005174 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 101 | 3.01E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 54 | 4.7E-9 | - |
| SMART | SM00256 | fbox_2 | 19 | 59 | 3.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 59 | 10.10684 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038716614.1 | F-box protein SKIP23-like [Tripterygium wilfordii] | 0 |
| TrEMBL | A0A7J7D2A5 | F-box protein SKIP23-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00477 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8712 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G007060, COCNU_05G007070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.83 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0012460 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0237820.1 |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_050265, gene-QYE76_050266, gene-QYE76_050830 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G003610, Oco02G003630 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g08830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G037800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200071, Pt_Chr0200105 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G020390, Chr03G005950, Chr05G011270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G195500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG014070, gene_TRIDC3BG018630 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G113600.1, TraesCS3B02G133000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb122000_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13251 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7756, Zma_g7757 |