Basic Information
Locus ID:
gene_8695
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 2343815 | 2347528 | + | gene_8695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 36,489.93 Da | 53.09 | 68.79 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 241 | 305 | 1.11743E-20 | - |
| CDD | cd16872 | ARID_HMGB9-like | 27 | 111 | 1.39481E-40 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 241 | 307 | 6.2E-11 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 28 | 111 | 4.7E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 20 | 122 | 8.76E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 238 | 312 | 1.15E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 17 | 121 | 8.4E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 222 | 319 | 4.8E-19 | IPR036910 |
| SMART | SM00398 | hmgende2 | 240 | 309 | 1.2E-14 | IPR009071 |
| SMART | SM00501 | bright_3 | 25 | 116 | 1.5E-28 | IPR001606 |
| SMART | SM01014 | ARID_2 | 21 | 111 | 5.1E-27 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 241 | 308 | 13.171349 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 24 | 115 | 25.274271 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 240 | - | - |
| Coils | Coil | Coil | 297 | 317 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010692487.1 | high mobility group B protein 9 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CME3 | High mobility group B protein 9 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology