Basic Information
Locus ID:
gene_8680
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 111802279 | 111803839 | - | gene_8680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 34,528.01 Da | 34.01 | 57.46 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 22 | 60 | 2.25041E-17 | - |
| CDD | cd00325 | chitinase_GH19 | 87 | 316 | 8.29658E-112 | - |
| Pfam | PF00187 | Chitin recognition protein | 23 | 60 | 7.2E-14 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 86 | 316 | 5.9E-130 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 82 | 322 | 6.19E-108 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 23 | 70 | 3.01E-13 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 91 | 322 | 3.3E-120 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 169 | 225 | 3.3E-120 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 21 | 63 | 8.4E-16 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 23 | 60 | 3.9E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 323 | 7.5E-126 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 21 | 62 | 10.597433 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 104 | 126 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 229 | 239 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 33 | 52 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 39 | 2.3E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 2.3E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 46 | 2.3E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021860442.1 | basic endochitinase [Spinacia oleracea] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QAR7 | Chitin-binding type-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_205770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology