Basic Information
Locus ID:
gene_8646
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 1433036 | 1436656 | + | gene_8646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 78,365.87 Da | 49.68 | 77.20 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 46 | 1.1E-7 | IPR001810 |
| Pfam | PF13456 | Reverse transcriptase-like | 394 | 468 | 1.5E-5 | IPR002156 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 182 | 3.14E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 47 | 1.8E-7 | - |
| SMART | SM00256 | fbox_2 | 11 | 51 | 3.7E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 10.875178 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 653 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_028774133.1 | F-box/kelch-repeat protein At3g06240-like [Prosopis alba] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |